/** \mainpage AVRISP MKII Programmer Project
*
- * \section Sec_Compat Project Compatibility:
+ * \section Sec_Compat Project Compatibility
*
* The following list indicates what microcontrollers are compatible with this project.
*
* \li Series 4 USB AVRs (ATMEGAxxU4)
* \li Series 2 USB AVRs (AT90USBxx2, ATMEGAxxU2) - <i>8KB versions with reduced features only</i>
*
- * \section Sec_Info USB Information:
+ * \section Sec_Info USB Information
*
* The following table gives a rundown of the USB utilization of this project.
*
* </tr>
* </table>
*
- * \section Sec_Description Project Description:
+ * \section Sec_Description Project Description
*
- * Firmware for an Atmel Studio/AVRStudio compatible AVRISP-MKII clone programmer. This project will enable the USB
+ * Firmware for an Atmel Studio compatible AVRISP-MKII clone programmer. This project will enable the USB
* AVR series of microcontrollers to act as a clone of the official Atmel AVRISP-MKII programmer, usable within
- * Atmel Studio/AVRStudio or with any software capable of driving a real Atmel AVRISP-MKII programmer. In its most
- * basic form, it allows for the programming of AVRs at the programmer's VCC voltage from within Atmel Studio/AVRStudio
- * with no special hardware other than the USB AVR and the parts needed for the USB interface. If the user desires, more
- * advanced circuits incorporating level conversion can be made to allow for the programming of 3.3V AVR designs.
+ * Atmel Studio or with any software capable of driving a real Atmel AVRISP-MKII programmer. In its most
+ * basic form, it allows for the programming of AVR TINY, MEGA and XMEGA devices at the programmer's VCC voltage from
+ * within Atmel Studio with no special hardware other than the USB AVR and the parts needed for the USB
+ * interface. If the user desires, more advanced circuits incorporating level conversion can be made to allow for the
+ * programming of target AVRs running at a different voltage to the programmer.
*
* This device spoofs Atmel's official AVRISP-MKII device PID so that it remains compatible with Atmel's AVRISP-MKII
- * drivers. When prompted, direct your OS to install Atmel's AVRISP-MKII drivers provided with Atmel Studio/AVRStudio.
+ * drivers. It is currently tested working under the following configurations:
+ *
+ * - <b>Windows:</b> Atmel Studio 7, with alternative driver
+ * - <b>Windows:</b> AVRDUDE 6.2, with alternative driver
+ * - <b>Linux:</b> AVRDUDE 6.1
+ *
+ * <b>Note that this clone requires a libUSB based driver under Windows,</b> due to an incompatible change in the official
+ * Jungo based driver. The alternative driver given here will function with both real and clone AVRISP devices in Atmel
+ * Studio 7 onwards under Windows - and as a bonus, also provides AVRDude access to the programmer.
+ *
+ * As of Atmel Studio version 7.0.1417 the legacy Jungo driver has been deprecated in favor of an official libUSB based
+ * driver, making the driver packaged here superfluous. Use the driver packaged here only if you are still using an earlier
+ * Atmel Studio 7 build, otherwise the official Atmel libUSB driver should be used.
*
* Note that this design currently has the following limitations:
* - No reversed/shorted target connector detection and notification
* - A separate header is required for each of the ISP, PDI and TPI programming protocols that the user wishes to use
*
- * On AVR models with an ADC converter, AVCC should be tied to 5V (e.g. VBUS) and the \c VTARGET_ADC_CHANNEL token should be
- * set to an appropriate ADC channel number in the project makefile for VTARGET detection to operate correctly. On models
- * without an ADC converter, VTARGET will report a fixed 3.3V level at all times.
+ * On AVR models with an ADC converter, the USB AVR's AVCC pin should be tied to 5V (e.g. VBUS) and the
+ * \c VTARGET_ADC_CHANNEL token should be set to an appropriate ADC channel number in the project makefile for VTARGET
+ * detection to operate correctly. On models without an ADC converter, VTARGET will report a fixed 3.3V level at all times
+ * which should allow the programmer to remain compatible at the protocol level with all AVR devices.
*
* While this application can be compiled for USB AVRs with as little as 8KB of FLASH, for full functionality 16KB or more
- * of FLASH is required. On 8KB devices, ISP or PDI/TPI programming support can be disabled to reduce program size.
+ * of FLASH is required. On 8KB devices, ISP or PDI/TPI protocol programming support can be disabled to reduce program size.
+ *
+ * \section Sec_Installation Installation
+ * The programmer supports multiple platforms, both Windows and Linux.
+ *
+ * \subsection SSec_LinuxInstallation Linux Installation
+ * On Linux systems, the programmer should be usable out of the box with no special setup other than (on some systems)
+ * editing of the system permissions to allow the programmer to be used from a non-elevated (root) context. The programmer
+ * is compatible with the free open source AVRDude programming software project.
+ *
+ * \subsection SSec_WindowsInstallation Windows Installation
+ * On Windows systems, due to an unfortunate limitation of the USB AVR devices and the Atmel Studio platform, the programmer
+ * requires an alternative libUSB based driver. Uninstall the existing Jungo driver for the device (if installed) and replace
+ * it with the driver that ships with this project, to enable access to the programmer in Atmel Studio and AVRDUDE.
*
* \section Sec_ISP ISP Connections
* Connections to the device for SPI programming (when enabled):
*
* <table>
* <tr>
- * <td><b>Programmer Pin:</b></td>
- * <td><b>Target Device Pin:</b></td>
- * <td><b>ISP 6 Pin Layout:</b></td>
+ * <th><b>Programmer Pin:</b></th>
+ * <th><b>Target Device Pin:</b></th>
+ * <th><b>ISP 6 Pin Layout:</b></th>
* </tr>
* <tr>
* <td>MISO</td>
*
* <table>
* <tr>
- * <td><b>Programmer Pin:</b></td>
- * <td><b>Target Device Pin:</b></td>
- * <td><b>PDI 6 Pin Layout:</b></td>
+ * <th><b>Programmer Pin:</b></th>
+ * <th><b>Target Device Pin:</b></th>
+ * <th><b>PDI 6 Pin Layout:</b></th>
* </tr>
* <tr>
* <td>Tx/Rx <b><sup>2</sup></b></td>
*
* <table>
* <tr>
- * <td><b>Programmer Pin:</b></td>
- * <td><b>Target Device Pin:</b></td>
- * <td><b>TPI 6 Pin Layout:</b></td>
+ * <th><b>Programmer Pin:</b></th>
+ * <th><b>Target Device Pin:</b></th>
+ * <th><b>TPI 6 Pin Layout:</b></th>
* </tr>
* <tr>
* <td>Tx/Rx <b><sup>2</sup></b></td>
*
* <table>
* <tr>
- * <td><b>Define Name:</b></td>
- * <td><b>Location:</b></td>
- * <td><b>Description:</b></td>
+ * <th><b>Define Name:</b></th>
+ * <th><b>Location:</b></th>
+ * <th><b>Description:</b></th>
* </tr>
* <tr>
* <td>AUX_LINE_PORT</td>
* <td>NO_VTARGET_DETECT</td>
* <td>AppConfig.h</td>
* <td>Define to disable VTARGET sampling and reporting on AVR models with an ADC converter. This will cause the programmer
- * to report a fixed 3.3V target voltage to the host regardless of the real target voltage.
+ * to report a fixed 3.3V target voltage to the host regardless of the real target voltage.
* \n \n <i>Ignored when compiled for targets lacking an ADC.</i></td>
* </tr>
* <tr>
* \n \n <i>Ignored when compiled for targets lacking an ADC, or when NO_VTARGET_DETECT is defined.</i></td>
* </tr>
* <tr>
- * <td>LIBUSB_DRIVER_COMPAT</td>
- * <td>AppConfig.h</td>
- * <td>Define to switch to a non-standard endpoint scheme, breaking compatibility with AVRStudio under Windows but making
- * the code compatible with software such as avrdude (all platforms) that use the libUSB driver.
- *
- * \note This option is incompatible with \c RESET_TOGGLES_LIBUSB_COMPAT.</td>
- * </tr>
- * <tr>
- * <td>RESET_TOGGLES_LIBUSB_COMPAT</td>
- * <td>AppConfig.h</td>
- * <td>Define to make the /RESET line of the AVR toggle between Jungo and libUSB driver compatibility modes. Each time the AVR is
- * reset externally via the reset pin, the compatibility mode will be toggled. The compatibility mode is preserved between
- * power cycles and is not toggled via other forms of reset such as Watchdog or Brown Out.
- *
- * \note This option is incompatible with \c LIBUSB_DRIVER_COMPAT.</td>
- * </tr>
- * <tr>
* <td>XCK_RESCUE_CLOCK_ENABLE</td>
* <td>AppConfig.h</td>
* <td>Define to move the ISP rescue clock to the AVR's XCK pin instead of the OCR1A output pin. This is useful for existing programming